Package ‘ xps ’
نویسنده
چکیده
Description The package handles pre-processing, normalization, filtering and analysis of Affymetrix GeneChip expression arrays, including exon arrays (Exon 1.0 ST: core, extended, full probesets), gene arrays (Gene 1.0 ST) and plate arrays on computers with 1 GB RAM only. It is an R wrapper to XPS (eXpression Profiling System), which is based on ROOT, an object-oriented framework developed at CERN. Thus, the prior installation of ROOT is a prerequisite for the usage of this package, however, no knowledge of ROOT is required. ROOT is licensed under LGPL and can be downloaded from http://root.cern.ch.
منابع مشابه
Introduction to the xps Package: Comparison to Affymetrix Power Tools (APT)
The aim of this document is to compare the results obtained with package xps to the results obtained with Affymetrix Power Tools (APT version apt-1.10.2). For this purpose the Exon Array Data Set ”Tissue Mixture” will be used, which can be downloaded from the Affymetrix web-site for expression arrays ”Human Genome U133 Plus 2.0”, ”Human Gene 1.0 ST” and ”Human Exon 1.0 ST”, respectively. First,...
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